A scene of Martin being heckled by children and vomiting corrosive enzymes on the windshield their car in response (during a stop for fast food on the way to Stathis Borans' home). The kids are little league players. They're terrified as the vomit creates a huge hole in the car. The little league coach angrily throws the food for the kids down in anger. This scene was filmed but deleted.
Alternate Ending: On the 2-Disc version of the Fly II, there is a alternate ending on Disc 1, under the special features section. The scene takes place in the daytime on Beth Logan's houseboat. It shows her bringing some food to Martin, who's sitting down on the dock. She asks, "How do you feel?" He replies, "Much better." As he is saying this, the camera zooms in on his eyes. One eye is an almost blackish color, while the other one is green.